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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgtgctaagtactacacagggcagtatctttagtgtagcagcatgttttgtgtagttgtccggactgatagtttggagtttcgggtgtgcattgacgaagctggatgtgattgggtgttcag

Basic information

species Physcomitrella patens
transcript PP1S505_6V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348255|gb|DC905497.1|DC905497
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAGAAAGCTGGGCTGAGTCTTCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208350053|gb|DC910288.1|DC910288
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGA-AAAGCTGGGCTGANTCATCTTGTTGACTACATGAAN
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208372097|gb|DC940279.1|DC940279
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|100352660|gb|BY945383.1|BY945383
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAGATTGCGCGTGGTAAG                         GTTTTTGACTGAAAAACCTGGGCTGAGTCATCTTGTTGACTTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTT-GACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACT-ACATGAAG
EST: gi|208353412|gb|DC938689.1|DC938689
EST:     CCTCANTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|100401171|gb|BY990866.1|BY990866
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208377072|gb|DC910846.1|DC910846
EST:     CCTCANTGACTGGTCTAA-CAACAATGACACTCAAATTGCNCGTGGCAAG                         GTTTTGACTGANAAANCTGGGCTGANTCATCTTGTTGACTAC-TGAAN
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|100359507|gb|BY947022.1|BY947022
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCA-G                         GNTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagG-TTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|100399512|gb|BY972756.1|BY972756
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGGAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208400164|gb|DC904812.1|DC904812
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGANAAAGCTGGNCTGANTCATCTTGTTGACTACATGAA
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAA
EST: gi|208391832|gb|DC942352.1|DC942352
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAAAAAGCTGGGCTGAGTCATCTTGTTGACTA
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTA
EST: gi|208376766|gb|DC902947.1|DC902947
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208350009|gb|DC910244.1|DC910244
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
EST: gi|208362445|gb|DC930978.1|DC930978
EST:     CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAG                         GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG
genomic: CCTCAGTGACTGGTCTAAACAACAATGACACTCAAATTGCGCGTGGCAAGgtatacttgt ... gggtgttcagGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG