1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatatatctagacatgctgtgagttagtgttgttattgtcatgttctaaatttgtgaaaatggattagttgtaatgacatttttatgttcgtttcatacagttctaattgaatcatggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGACCCTTCATATTTGCCCAATA
species | Physcomitrella patens |
transcript | PP1S100_23V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAG GTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGEST: gi|162225722|gb|FC401864.1|FC401864
genomic: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAGgtatatatct ... ggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAG
EST: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAG GTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGEST: gi|18335062|gb|BJ167080.1|BJ167080
genomic: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAGgtatatatct ... ggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAG
EST: CTACATGCTTGCCAAACCCGAGTGCAAG GTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGEST: gi|162225721|gb|FC401863.1|FC401863
genomic: CTACATGCTTGCCAAACCCGAGTGCAAGgtatatatct ... ggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAG
EST: ACATGCTTGCCAAACCCGAGTGCAAG GTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGEST: gi|67575484|gb|BJ948308.1|BJ948308
genomic: ACATGCTTGCCAAACCCGAGTGCAAGgtatatatct ... ggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAG
EST: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAG GTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGANGGTGAG
genomic: TCAGTGCTGTCTACGGCGGCACCTACATGCTTGCCAAACCCGAGTGCAAGgtatatatct ... ggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAG
taatgacatttttatgttcgtttcatacagttctaattgaatcatggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGACCCTTCATATTTGCCCAATA
ttctaat putative branch site (score: 4)
atttttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatctagacatgctgtgagttagtgttgttattgtcatgttctaaatttgtgaaaatggattagttgtaatgacatttttatgttcgtttcatacagttctaattgaatcatggtgccacagGTTGAATTTGATGAGATGGGTCAAGTTGTGGGAGTCACCTCTGAGGGTGAGACCGTGAAGGCCAAGAAAGTTGTTTGTGACCCTTCATATTTGCCCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA