1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCCGCAAATTTTTTATCTTTGTCCAGAACTATGAGGAGGCCGACGCCAAGACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaacttatctaagactcatttgtttgctttagagtttgcaaatccgcatgcttccgagtgcacacctttccttccgaggaatttgttgagagcggtagtaaatgctatcaggaagttttcactgtgatagtgtttctatgatgttctacagctcactttgtaaacggccatgcag
species | Physcomitrella patens |
transcript | PP1S100_23V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGA GAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGCEST: gi|208358392|gb|DC943223.1|DC943223
genomic: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaac ... ggccatgcagGAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
EST: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGA GAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGCEST: gi|162225722|gb|FC401864.1|FC401864
genomic: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaac ... ggccatgcagGAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
EST: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGA GAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGCEST: gi|100437761|gb|BY979815.1|BY979815
genomic: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaac ... ggccatgcagGAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
EST: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGA GAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGCEST: gi|208359106|gb|DC930438.1|DC930438
genomic: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaac ... ggccatgcagGAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
EST: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGA GAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
genomic: ACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaac ... ggccatgcagGAAGTTCGGGCTTGATGCTAACACAATTGACTTCGTCGGACATTCGCTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGCAAATTTTTTATCTTTGTCCAGAACTATGAGGAGGCCGACGCCAAGACACACGAAGGAATGGACTTGCGGGCAGTTCCAACTAAAGAGCTCTTCGAgtatatcaacttatctaagactcatttgtttgctttagagtttgcaaatccgcatgcttccgagtgcacacctttccttccgaggaatttgttgagagcggtagtaaatgctatcaggaagttttcactgtgatagtgtttctatgatgttctacagctcactttgtaaacggccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT