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...tttctttaaaaaattgagttttgtttcataaaagcactttctagatttctttagtgttaattttttattaaccactgtgctgtttgtggcttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTATATAGCATTCGTTTCAGCAGAGGTGGAGACTGAAAATCCTGAAGCTGAG
species | Physcomitrella patens |
transcript | PP1S100_23V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAANAGGCAAGTEST: gi|67698955|gb|BJ959188.1|BJ959188
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAA-AGGCAAGT
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTAEST: gi|162225722|gb|FC401864.1|FC401864
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
EST: TCGGTTCAAATAATTCTGCCGCANAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTAEST: gi|18335062|gb|BJ167080.1|BJ167080
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTAEST: gi|162225721|gb|FC401863.1|FC401863
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTAEST: gi|37847853|gb|BJ605861.1|BJ605861
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTAEST: gi|162159100|gb|FC334271.1|FC334271
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
EST: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACAT GTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
genomic: TCGGTTCAAATAATTCTGCCGCAAAAGCAACTTGGTCGCAGATCAGACATgtaagtcgtg ... ttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTA
tttctttagtgttaattttttattaaccactgtgctgtttgtggcttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTATATAGCATTCGTTTCAGCAGAGGTGGAGACTGAAAATCCTGAAGCTGAG
tattaac putative branch site (score: 8)
ttagtgttaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctttaaaaaattgagttttgtttcataaaagcactttctagatttctttagtgttaattttttattaaccactgtgctgtttgtggcttgctggcagGTATGTGTTCTGCTGCTCTCACTCTCACAATGTTGCACCTAAAGGCAAGTATATAGCATTCGTTTCAGCAGAGGTGGAGACTGAAAATCCTGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA