1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgattttctttttcagttcatttattctcatgttttatgtttttaagctgtagctctttcggtgtagtaaaccaatttcttagtattgttttgcatccctttaatttgtattgtcatgaaattggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATCCGCTATATGGCCTCGGCGAGTTGCCACAG
species | Physcomitrella patens |
transcript | PP1S100_23V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAA CTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATEST: gi|208358392|gb|DC943223.1|DC943223
genomic: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAAgtatgatttt ... attggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTAT
EST: ACGATCGTTTCTTGACTGANCCAGCTTTGGATACTGTGAAAA-AGTGAAA CTCTACGCCGAGTCAATGGCTCGCTTCCEST: gi|162225722|gb|FC401864.1|FC401864
genomic: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAAgtatgatttt ... attggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCC
EST: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAA CTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATEST: gi|67575484|gb|BJ948308.1|BJ948308
genomic: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAAgtatgatttt ... attggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTAT
EST: GGATACTGGTGAAAAGAGTGAAA CTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATEST: gi|208359106|gb|DC930438.1|DC930438
genomic: GGATACT-GTGAAAAGAGTGAAAgtatgatttt ... attggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTAT
EST: ACGATCGTTTCTTGACTGANCCAGCTTTGGATACTGTGAAAANANTGAAA CTCTACGCCGAGTCAATGGCTCNCTTC
genomic: ACGATCGTTTCTTGACTGAGCCAGCTTTGGATACTGTGAAAAGAGTGAAAgtatgatttt ... attggtgcagCTCTACGCCGAGTCAATGGCTCGCTTC
tttcttagtattgttttgcatccctttaatttgtattgtcatgaaattggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATCCGCTATATGGCCTCGGCGAGTTGCCACAG
ctttaat putative branch site (score: 5)
tttaatttgtattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattttctttttcagttcatttattctcatgttttatgtttttaagctgtagctctttcggtgtagtaaaccaatttcttagtattgttttgcatccctttaatttgtattgtcatgaaattggtgcagCTCTACGCCGAGTCAATGGCTCGCTTCCAAGGAGGATCACCCTACATTTATCCGCTATATGGCCTCGGCGAGTTGCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT