1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggtgtgcccttgattctgacactgatttgtaaagtttcgactttatcccttatccatattttctagatctcggtgtgatggattttgtgtatggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGTGATGGATGTTACAAATTTAGGTGTTTTCTCCCAGTAGACCATGAGAGT
species | Physcomitrella patens |
transcript | PP1S100_23V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|208373324|gb|DC944967.1|DC944967
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|162159099|gb|FC334270.1|FC334270
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|208372810|gb|DC956211.1|DC956211
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|67698955|gb|BJ959188.1|BJ959188
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|37837357|gb|BJ595365.1|BJ595365
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|18335062|gb|BJ167080.1|BJ167080
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|162225721|gb|FC401863.1|FC401863
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|37847853|gb|BJ605861.1|BJ605861
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|208371608|gb|DC952250.1|DC952250
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|162159100|gb|FC334271.1|FC334271
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGEST: gi|37852235|gb|BJ610243.1|BJ610243
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
EST: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAG AATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
genomic: AGACGACAGTGCAAGATGTACTTTCAATGTATACCAAAATCACTGGAAAGgtcagttctg ... atggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAG
tcccttatccatattttctagatctcggtgtgatggattttgtgtatggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGTGATGGATGTTACAAATTTAGGTGTTTTCTCCCAGTAGACCATGAGAGT
atattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtgcccttgattctgacactgatttgtaaagtttcgactttatcccttatccatattttctagatctcggtgtgatggattttgtgtatggatgcagAATCTGGATCTGAGCGTGGACCTAAGCGCAGCAAGCGCTGCCGAGGAGTAGTGATGGATGTTACAAATTTAGGTGTTTTCTCCCAGTAGACCATGAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA