1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtttttgttttccttcagtgcacattatcatgcaaaatattactgagtttaatctatcaagatttcttcattaccaactgtaagctctcttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTGCTCATGTGTCAAATTTAGAAGCTACAGTAATGACAGAGAACACCAGCG
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG AACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTEST: gi|29664774|gb|CB661049.1|CB661049
genomic: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAGgtttgttagc ... ttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
EST: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG AACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTEST: gi|58687598|gb|CK076285.1|CK076285
genomic: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAGgtttgttagc ... ttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
EST: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG AACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTEST: gi|218485289|gb|FG957634.1|FG957634
genomic: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAGgtttgttagc ... ttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
EST: TTTGGCC-TGGAAAAG AACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTEST: gi|33653661|gb|CF276275.1|CF276275
genomic: TTTGGCCTTGGAAAAGgtttgttagc ... ttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
EST: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG AACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
genomic: CAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAGgtttgttagc ... ttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCT
gagtttaatctatcaagatttcttcattaccaactgtaagctctcttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTGCTCATGTGTCAAATTTAGAAGCTACAGTAATGACAGAGAACACCAGCG
gtttaat putative branch site (score: 15)
ctctcttattt putative PPT
taatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttttgttttccttcagtgcacattatcatgcaaaatattactgagtttaatctatcaagatttcttcattaccaactgtaagctctcttatttgcagAACCTCCTGGTCACATCTACAATGACCAAGTGCACTGATCCATACCCAGCTGCTCATGTGTCAAATTTAGAAGCTACAGTAATGACAGAGAACACCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
-gtttttg
- - - - - - ccttcag
- - - - - - - - - - gcacatt
- - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - ttactga