1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGGCTGGGGAGGATTCGGTGGGGCCCGCTGTGGCGCCCGAAGCATCCGTCGATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatgcaaaattacgctgttgttgattggatctgtagaactagctttcaatgagtgttagctagcgactagatgcgtatttagttgggcattata...
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGG ATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCATEST: gi|88402852|gb|CI613300.1|CI613300
genomic: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatg ... tttgttgcagATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
EST: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGG ATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCATEST: gi|218498678|gb|FG946465.1|FG946465
genomic: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatg ... tttgttgcagATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
EST: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGG ATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCATEST: gi|88301494|gb|CI597187.1|CI597187
genomic: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatg ... tttgttgcagATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
EST: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGG ATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCATEST: gi|88729924|gb|CI753145.1|CI753145
genomic: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatg ... tttgttgcagATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
EST: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGG ATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
genomic: GATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatg ... tttgttgcagATCTACAGAGGAAAATTTCGATGTCTCTCCTGAGGAAATGAGATCAGTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTGGGGAGGATTCGGTGGGGCCCGCTGTGGCGCCCGAAGCATCCGTCGATTCGGATCAGCATATCGAGGATGCAGCCACGGAGGACGGGAAGCATGGgtgagtgatgcaaaattacgctgttgttgattggatctgtagaactagctttcaatgagtgttagctagcgactagatgcgtatttagttgggcattata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA