1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCCAAAACCAAAACCATTCCCCTTCCTACACCTCGCCACCTCCCGCACACCTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcactcctccgctgcaccaccacggacagccactgtccaccgcagcaacccccgccgtaaccctaaatctcgggcaccttgcgccagcgcccta...
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAG TTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCGEST: gi|88402852|gb|CI613300.1|CI613300
genomic: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcac ... atccttgcagTTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCG
EST: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGGTGCAG TTACTCGAAGGGCTGGCAATGGAGGGTGCGGGGGTGGAGGACTCGGCGGCGEST: gi|88301494|gb|CI597187.1|CI597187
genomic: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcac ... atccttgcagTTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCG
EST: TCGCTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAG TTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCGEST: gi|88729924|gb|CI753145.1|CI753145
genomic: TCG-TCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcac ... atccttgcagTTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCG
EST: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAG TTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCG
genomic: CTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcac ... atccttgcagTTACTCGAAGGGCTGGCAATGGAGGGTGCGGCGGTGGAGGACTCGGCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAAAACCAAAACCATTCCCCTTCCTACACCTCGCCACCTCCCGCACACCTCGTCGCCCTCCTCCTCCGCCGGCGCCGCCGCCGGCGACAAGGCTGCAGgtgagcgcactcctccgctgcaccaccacggacagccactgtccaccgcagcaacccccgccgtaaccctaaatctcgggcaccttgcgccagcgcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccagcg