1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agttttaattatcaagagattgatgcttgttgatagcatcagggaaaaaacaagtagtagggtatttcttttcccttgagattaacttcttacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTG GCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAGEST: gi|88402852|gb|CI613300.1|CI613300
genomic: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTGgtattacttg ... tacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
EST: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACAAGGGAAAGTTCTG GCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAGEST: gi|218498678|gb|FG946465.1|FG946465
genomic: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTGgtattacttg ... tacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
EST: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTG GCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAGEST: gi|33653661|gb|CF276275.1|CF276275
genomic: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTGgtattacttg ... tacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
EST: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTG GCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAGEST: gi|88301494|gb|CI597187.1|CI597187
genomic: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTGgtattacttg ... tacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
EST: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTG GCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
genomic: GAGGAAATGAGATCAGTCATAGAAATTATAGCTGACACGGGAAAGTTCTGgtattacttg ... tacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
aaaaacaagtagtagggtatttcttttcccttgagattaacttcttacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
ttcttac putative branch site (score: 12)
cttcttacttttc CT-rich tract
tatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttaattatcaagagattgatgcttgttgatagcatcagggaaaaaacaagtagtagggtatttcttttcccttgagattaacttcttacttttcagGCATGATTGGAGCTTTCTCAAGAGATTGCTGTCTCTCCAATTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - tgatgct
- - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - -gcatcag
- - - - - - - - - - - - - - - - - - - - - -gaaaaaa