1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttatgaataatctatttaaaaattctctttagtggttcgatgttggtagtgcagttatttcgaaagaatgttctgttgtttcataatctgttttggacttgcattgctttgaattcacatacttacattagttttatatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG ATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGEST: gi|218498678|gb|FG946465.1|FG946465
genomic: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAGgttatgaata ... atatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTG
EST: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG ATTTTTGTTGGATCCAAAAGGAACATEST: gi|58687598|gb|CK076285.1|CK076285
genomic: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAGgttatgaata ... atatttgcagATTTT-GTTGGATCCAAAAGGAACAT
EST: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG ATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGEST: gi|33653661|gb|CF276275.1|CF276275
genomic: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAGgttatgaata ... atatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTG
EST: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG ATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTG
genomic: TCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAGgttatgaata ... atatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTG
ttttggacttgcattgctttgaattcacatacttacattagttttatatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG
tacttac putative branch site (score: 14)
atacttacattagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgaataatctatttaaaaattctctttagtggttcgatgttggtagtgcagttatttcgaaagaatgttctgttgtttcataatctgttttggacttgcattgctttgaattcacatacttacattagttttatatttgcagATTTTGTTGGATCCAAAAGGAACATATACTAAACTGCCAAAGCTTGCTTTGGCCTTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA