1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tagtgttttttctacaggccacctttccatcattcctgacctgcattttatcgagcatacacaaatcactaatttctttttaaaaaaaaaatgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG
species | Oryza sativa |
transcript | LOC_Os06g19650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATG CTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGEST: gi|218498678|gb|FG946465.1|FG946465
genomic: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATGgtactgttat ... atgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTG
EST: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATG CTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGEST: gi|58687598|gb|CK076285.1|CK076285
genomic: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATGgtactgttat ... atgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTG
EST: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATG CTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGEST: gi|33653661|gb|CF276275.1|CF276275
genomic: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATGgtactgttat ... atgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTG
EST: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATG CTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTG
genomic: TTCTTTCTCTGGGGAGACATACTCCGAGCTTGTCATCTGGCTCAATGATGgtactgttat ... atgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTG
ttttatcgagcatacacaaatcactaatttctttttaaaaaaaaaatgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG
cactaat putative branch site (score: 20)
atacacaaatcactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtgttttttctacaggccacctttccatcattcctgacctgcattttatcgagcatacacaaatcactaatttctttttaaaaaaaaaatgtttgcagCTCTCTTGAGGTTCGAAGAAGGTCCTCCATTTACACTGCAAAGGCTATGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - tacaggc
- - - - - - - - - - - - - - - cattcct
- - - - - - - - - - - - - - - - - - - acctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa