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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagtgttctctgctgtttcttcagcgttttcattctctggctccttcaactttctagtatatcactttttttccgttcactgtgatttttaattctcagGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAG

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G000393_T02 (Zea mays), 3'ss of exon 8
gaagtgttctctgctgtttcttcagcgttttcattctctggctccttcaactttctagtatatcacttttttt-----ccgttcactgtgatttttaattctcagGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAG
|  |||  |||     | |    |  ||||  | | | |   ||     ||| | || |   |     ||||      | | |    || |||  |||    |||||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||| |||||||| ||
ggggtggactc----atgtgacaaaagtttctagtttttcattcaagatactctgtaatgccttttcattttcaatgactgattcacgttattcataaaaa-cagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGCTCGCTACATCAACATAAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaactttctagtatatcactttttttccgttcactgtgatttttaattctcagGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAG
                                          ttttaat  putative branch site (score: 3)
                                         ttttt  CT-rich tract
             tatatcacttttttt  TA-rich tract