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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattcccccctctctctctctgaagaggaattcagaattcagaattttagttgctgatttgaaatgggttgtttggtggcagTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAACTGCTACTGGTAGTTCTGAC

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G000393_T02 (Zea mays), 3'ss of exon 3
gtaattcccccctctctc-tctctgaagaggaattcagaattcagaattttagttgctgatttgaaatgggttgtttggtggcagTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAACTGCTACTGGTAGTTCTGAC
|| | |   |  |   || |   ||||   || ||      | |   | |   ||||||| | ||||||     | ||||||||| |  ||||| ||||| ||||  ||||| || |||||||| || ||||| |||||||||||||| |||||||||||  | |||||  |||     || |||
gtgagttttcagttattcgtaagtgaatttgagttgctgtgttaatttatgctttgctgactcgaaatgc----tgtggtggcagGGCGATTGGAAGGAAAATTGTTGAGGCGGAGATGGACCTGACCAAGGCCAAGAGCGAGGGGTACCTGTGGGGGAACAGGACTGCAGCTGTGGACTCCGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattcagaattcagaattttagttgctgatttgaaatgggttgtttggtggcagTGGAATTGGGAGGAAGATTGCGGAGGCAGAAATGGACCTTACAAAGGCGAAGAGCGAGGGGTATCTGTGGGGGAATGGAACTGCTACTGGTAGTTCTGAC
                        tgctgat  putative branch site (score: 3)
        aattcagaatttta  TA-rich tract