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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgtacgcgcgcccgcgcgctcagatccggggggaatttccgtggagttttctgattgtttcgttgattggattttttttttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 1
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgtacgcgcgcccgcgcgctcagatccggggggaatttccgtggagttttctg-attgtttcgttgattggattttttttttgcag---
|| |  ||||| |||| || ||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |   | || || |||||||||||  |    | ||   |  ||    |   |  |  ||||    |   |  |   |  |      
CCCCGCCCTCCTCCTCTGCTTCCTCCGCCCTCGCCTCGGGCAGGGTCCCTCTCGTCATGGCCTTCCTCTCCTGCCTCGCCTGGCTCTACGTCGCCGGCCGgtacgccc---cccctgcccgctcagatccctgac--actttgatccagcacccgatagggagtcgtgatcttattcctggctccgtctcag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCT-CGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgta-----cgcgcgcccg---cgcgctcagatccggggggaatttccgtggagttttctgatt-gtttcgttgattggattttttttttgcag--------------------------------------------
 |    |         ||    ||  ||||  ||   |   ||      | ||||| ||||||||| |||||||| ||||||||||||||||||||||  ||||||       ||     |||    ||  |  ||||||   |  |  ||  ||  | ||| ||||| |   ||    |  | | ||  ||||| |                                             
-CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 1
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCT-CGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacg---tacgcgcgcccgc------gcgctcagatccggggggaatttccgtggagttttctgattgtttcgttgattggattttttttttgcag--------------------------------------------
 |    |         ||    ||  ||||  ||   |   ||      ||||||||||||||||| |||||||| ||||||||||||||||||| ||  ||||||   ||  ||    | |      ||  |  ||||||  |   |  ||  ||  | ||  |||||        ||||    | ||  ||| ||                                             
-CGAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGACCTCGAAATCGTCCCTCGTCATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCTGGAAGgtacgcgataatcgttttctccaaattgcttttggatccgtcgaataaatcgttgttgattcgtgattcgcaacgcgattctgctgttcgttttcaacgaaacggattttcactttttttttgttgttttggaattgttag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgtacgcgcgcccgcgcgctcagatccggggggaatttccgtggagttttctgattgtttcgttgatt--ggattttttttttgcag------------
|   |      |        |||    | |    | |    | |  | | ||  || |||||||| |||| || || || |||||||||||||| |||||||||||         |   |  |    || |       || | || ||||  | | |   | ||  |||||   ||| | || || | |             
CAGACCGGCGAGGTAGGTTTTCCAAGTCTCAGAACACCTCCAAGCCCTCTCTTATCTTGGCCTTCTTCTCTTGTCTTGCTTGGCTCTACGTCGCTGGCCGgtacgtcgcttttttcttccatttccgtctgattttt-ttcctgttgagtaatatcaa-atctcactgattctagatgtgttcttcggaatgcatcccggaa

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 1
CCTCCTCCTCCGCCTCCGCCTCCGCCGCCCTCTCCTCGGGGAGGGTCCCCCTCGTCATGGCCTTCCTCTCCTGCCTCGCGTGGCTCTACGTCGCCGGCCGgtacgtacgcgcgcccgcgcgctcagatccggggggaatttccgtggagttttctgattgtttcgttgat-tggattttttttttgcag-----------
 | | ||   |   |     |||    | ||     |    |    | | ||| ||||||||||| ||||||||||||| |||||||||||||||||| |||   | | |    |      ||             |||||    |   |  |||  || || |||| || | | |||||| || |||            
ACGCATCACGCCGATGGAGATCCAAGCCTCTTCAGACTTCCAATCCCTCTCTCATCATGGCCTTCTTCTCCTGCCTCGCTTGGCTCTACGTCGCCGGCAGgtttctcctcttttctctttccttccgctgaatcctaatttattcgatctcatctcttttttccgtttatgttgtttttttgttcgcaaattggaaggca