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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattccttttctgttgaaacattacacctatggcttatttcggcttaatgttttgactcattacaatctatatattag

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 6
GAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgta--------attccttttctgt------tgaaacat--tacacctatggcttatttcggcttaatgtt---ttgactcattacaatctatatattag
|| ||||| |||||||  ||  ||||||||||||| ||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| |||||| | ||||         |||  | |||||      ||| |||   |||  |||| | || || |  ||| || ||    |||| | || |||    | | | ||
GAATTACCGAGCAAAGCAAAAATTTTCTTCAGTGCTGCAGTTGAAGCCTGGGATGCAGAATTTTATGTCAAAGTTGAAGATAACATTAATCTTGACTTAGgtatttttcctgttctctctctgtgtgtgctgatacacagtacttctattgatt-ttgccccttcattttaaactgaccccttgcaagtattctgtcag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 7
GAGTTACCAAGCAAAGTTAAGTTTTTCTTCAGTGCAGCAATTGAAGCTTGGGACGCAGAGTTCTATGTGAAAGTCGATGACAACATTAACCTTGACCTGGgtaattccttttctgttgaaacattacacc-tatggcttatttcggcttaat----gttttgac----tcatta--caatctatatattag---------
|||||||| |  ||||| ||||| |||| |||||| ||  || |   ||||||||||||||| ||||| ||||| ||||||||| || || | || || |||| | | |  ||| |     | ||       |  |||   || |    |||    || |  ||    || ||    ||   || | || |         
GAGTTACCGAAGAAAGTGAAGTTCTTCTACAGTGCTGCTGTTCAGAATTGGGACGCAGAGTTTTATGTCAAAGTTGATGACAACGTTGACTTGGATCTTGgtagtacttcctctttcatctctttgtcttgcaaagctatgtttgatccaatcagggtatcaacgatgtctttgagtaacaaatgttttcggtctaacag