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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatctaataacatttaatatcatttttccaatttgtccttcacaaaaaattagtactgtagtacatgcagaagacttttggctttgcttggttgt...

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G000393_T01 (Zea mays), 5'ss of exon 6
TGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatctaataacatttaatatcatttttccaatttgtccttcacaaaaaattagtactgtagtacatgcagaagacttttggctttgcttggttgt---------------------------------------------------------------------------------
||||||||||||||||||||||||||| || || |||||||||||||| | ||| || || ||||||||||||||||||| ||| ||  |  |  |||      ||    |||||||||||||    | |||||   || | |  |    || ||| | | || |||| ||                                                                                   
TGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacctattagtacctcttat------tctcgattgtccttcacaagttgt-agtacgcaagca-agacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatagtaagcattttggattgggcag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G000393_T02 (Zea mays), 5'ss of exon 5
---------------------------TGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaaggatctaataacatttaatatcatttttccaatttgtccttcacaaaaaattagtactgtagtacatgcagaagacttttggctttgcttggttgt------------------------------------------------------------
                           ||||||||||||||||||||||||||| || || |||||||||||||| | ||| || || ||||||||||||||||||| ||| ||  |  |  |||      ||    |||||||||||||    | |||||   || | |  |    || ||| | | || |||| ||                                                              
ATTATGTATACCTTTTTGGACCTGCAGTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTTgtaaggacctattagtacctcttat------tctcgattgtccttcacaagttgt-agtacgcaagca-agacttttgagtttagacctttcttgcttccatcaaagactaggtaggacccatgtgatcctatacatttcatcaatgaactttgaaatag

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 6
TGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTTgtaag-----gatctaataacatttaatatcatttttccaatt--tgtccttcacaaaaaattagtactgtagtacatgcagaagacttttggctttgcttggttgt
||| ||||||||||||||||| || ||||| || ||||  ||||||||   ||| || ||||||||||||||||||||     ||| | |        || ||||  | |   |||  | |  ||      | || ||||       |  |    || | ||||  ||| |   |     
TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTTgtaagttatggatttcagtgttaccaaaatcaactatttcattattttgttttcttttacatgagta----gacatgttgccaaaatttttatcttagaaagag---