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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttattctggatccatatctcttatatgtagcatctctagcaccttagacaatcattcgccccatatcattctcaggcttttcttcatgtttagttttcctactgaaattgttctgtttggtccttcagTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT

Basic information

species Oryza sativa
transcript LOC_Os06g07905.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G000393_T01 (Zea mays), 3'ss of exon 5
gttttattctggatccatatctcttatatgtagcatc--------tctagcaccttagacaatcatt--------cgccccatatcattct---------caggcttttcttcatgtttagttttcctactgaaattgttctgtttggtccttcagTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT
||||| ||||||||| ||| || | |  |   |||||        |  || |  | | |  ||||||        ||     ||| ||  |          |  |  || | ||| | | |||||  |  | |  |    || ||||| ||| |||||||||||||||||||||||||||||| || || |||||||||||||| | ||| || || ||||||||||||
gttttgttctggatctatacctttgagttactgcatcattcttagttcagaatttaacaatatcattgtcattcccgttttctattatattagaaaaatataatccattttccatctctcgttttattgattatgtatacctttttggacctgcagTGCAAATCGAGGTGATAGCTTGGACCGTAATATTGATGATGAAAATCGGCAGACAAAGGACTTCTTGATTCTT

upper sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gttttattctggatccatatctcttatatgtagcatctctagcaccttagacaatca-ttcgccccatat---cattctcaggcttttcttcatgtttagttttcctactgaaattgttctg-tttggtcctt-cagTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT
                     || ||| || ||   |||  |  |  |      | | |  | ||||| | ||  |  |      || |   ||||   ||  || |  | ||| |   ||||          || |  |   ||  |  |  |||||| ||||||||||||||||| || ||||| || ||||  ||||||||   ||| || |||||||||||||||
gttgtcccacacacttaaatcttcattttgtatttgtatggc--acttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcagTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTTGACAAAGGATTTCTTGATTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcttttcttcatgtttagttttcctactgaaattgttctgtttggtccttcagTGCAAATCGAGGTGATAGCTTGGACCGCAACATCGATGATGAAAATCGTCGGACGAAAGATTTCTTGATTCTT
                                               tccttc  CT-rich tract
               tttagtttt  TA-rich tract