1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatataagctccacgaatagtttgaccattttgttggtaactgtactgactgtcatttgatatgttttttccag
species | Oryza sativa |
transcript | LOC_Os04g35920.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTEST: gi|218504838|gb|FG949406.1|FG949406
genomic: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCT
EST: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTEST: gi|2796658|gb|AA749952.1|AA749952
genomic: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCT
EST: AAAGCAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTEST: gi|29671972|gb|CB668247.1|CB668247
genomic: AAAG-AGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCT
EST: AGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTEST: gi|38469103|gb|CF953234.1|CF953234
genomic: AGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCT
EST: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCTEST: gi|29681022|gb|CB677297.1|CB677297
genomic: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCTCAGCAGCAGTCAGGGACCCCTATGAAAAATGCT
EST: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT ACATCTGATGTCACATCT
genomic: AAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatat ... ttttttccagACATCTGATGTCACATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAATgtaagtatataagctccacgaatagtttgaccattttgttggtaactgtactgactgtcatttgatatgttttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG