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gtgtgatcagaatatagttttttattctgcctttgacatttcaagggcctatgttttgcgtgaaatgatttttattcactagatttcttataatatatgaatgttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG
species | Oryza sativa |
transcript | LOC_Os04g35920.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCAT--G AGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGEST: gi|33684829|gb|CF313068.1|CF313068
genomic: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGgtgtgatcag ... ttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
EST: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAG AGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGEST: gi|29671972|gb|CB668247.1|CB668247
genomic: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGgtgtgatcag ... ttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
EST: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAG AGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCCATGEST: gi|58606714|gb|CK034747.1|CK034747
genomic: CTGATGGAAAGCCTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGgtgtgatcag ... ttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
EST: GAGAGCCTCTGCCAACTATGGTGCTCAT--G AGGCAAGTGTGGGTTCAAAAGTCAAGCTCGGCGACGTGATCTTGTCCAATGEST: gi|89175126|gb|CI111645.1|CI111645
genomic: GAGAGCCTCTGCCAACTATGGTGCTCATGAGgtgtgatcag ... ttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
EST: CTTCAAAGAGAGCCTCTGCCAACTATGTTGCTCATGAG AGTCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
genomic: CTTCAAAGAGAGCCTCTGCCAACTATGGTGCTCATGAGgtgtgatcag ... ttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATG
cgtgaaatgatttttattcactagatttcttataatatatgaatgttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG
aatgatttttattcac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatcagaatatagttttttattctgcctttgacatttcaagggcctatgttttgcgtgaaatgatttttattcactagatttcttataatatatgaatgttatatgtagAGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT