1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCCGGAATACTTGGAGTTTCTTGAATCGATTTCAAAGCCTGCTGAGCATCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtattgtttgtaatatcagattataattatgcctttcaaagatgccaagcataaaagaagggtctattatcaacttgatcactattgcag
species | Oryza sativa |
transcript | LOC_Os04g35920.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAG CTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCCEST: gi|33796838|gb|CF324284.1|CF324284
genomic: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtatt ... actattgcagCTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCC
EST: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAG CTGCTGGAAAGGAACCACCEST: gi|29681022|gb|CB677297.1|CB677297
genomic: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtatt ... actattgcagCTGCTGGAAAGGAACCACC
EST: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAG CTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCCEST: gi|7168822|gb|AU062730.2|AU062730
genomic: TCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtatt ... actattgcagCTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCC
EST: CTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAG CTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCC
genomic: CTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtatt ... actattgcagCTGCTGGAAAGGAACCACCTGTTGTGACGCCTCTTATGGTCTATGTTCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGGAATACTTGGAGTTTCTTGAATCGATTTCAAAGCCTGCTGAGCATCTGCCAAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGgtaaagtattgtttgtaatatcagattataattatgcctttcaaagatgccaagcataaaagaagggtctattatcaacttgatcactattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA