1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aattgttgatgtatgctatttttgcactttctgcccatatgtcttgatgaaagttcctttttagttgttaatattgctgtttcgttcaattgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT
species | Oryza sativa |
transcript | LOC_Os04g35920.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAG ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAEST: gi|58672500|gb|CK061186.1|CK061186
genomic: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAGgtactgctgg ... tgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAA
EST: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAG ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAEST: gi|38469103|gb|CF953234.1|CF953234
genomic: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAGgtactgctgg ... tgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAA
EST: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAG ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAEST: gi|29681022|gb|CB677297.1|CB677297
genomic: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAGgtactgctgg ... tgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAA
EST: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAG ATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAEST: gi|7168822|gb|AU062730.2|AU062730
genomic: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAGgtactgctgg ... tgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAA
EST: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATNCGCAGAGGGAAAAAG ATGCTACAAGTGGCGGGATTTCTNGTTCTGCTCATGTCGCGGAAAACAAAA
genomic: AACTTATATCTTAGTGCCAAAGAGAGACGAGCATGCGCAGAGGGAAAAAGgtactgctgg ... tgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAA
gatgaaagttcctttttagttgttaatattgctgtttcgttcaattgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT
tgttaat putative branch site (score: 31)
ttgtctc putative PPT
tttttagttgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgttgatgtatgctatttttgcactttctgcccatatgtcttgatgaaagttcctttttagttgttaatattgctgtttcgttcaattgtctcgtagATGCTACAAGTGGCGGGATTTCTGGTTCTGCTCATGTCGCGGAAAACAAAAAAGAGAAAATTGTGCTTTTGAAAGGAAGAGCAAGGGTCGATTCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- ttgttga
- - - - -tgtatgc
- - - - - - - - - -ttttgca
- - - - - - - - - - - - - - ttctgcc
- - - - - - - - - - - - - - - - - -catatgt
- - - - - - - - - - - - - - - - - - - - - cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt