1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatttgtggtccagaaattttgttttggtctttggttatcaaaacacatgcaccacaagaaaaagaattactagaagtgtgtcaccaaatacacgctaatttatttgctcttttgcag
species | Oryza sativa |
transcript | LOC_Os04g35920.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG ATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCTEST: gi|33684829|gb|CF313068.1|CF313068
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
EST: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG ATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCTEST: gi|29671972|gb|CB668247.1|CB668247
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
EST: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCCATGATG ATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCTEST: gi|29626480|gb|CB631491.1|CB631491
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
EST: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG ATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCTEST: gi|58606714|gb|CK034747.1|CK034747
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
EST: AAGTGTGGGTTCAAAAGTCAAGCTCGGCGACGTGATCTTGTCCAATGATG ATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCTEST: gi|89175126|gb|CI111645.1|CI111645
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
EST: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATG ATACTCATCGAGACGAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
genomic: AAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatt ... tcttttgcagATACTCATCAAAACAAATATTGCAAGTTGTGGAGTTCTGGATTTTGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCAAGTGTGGGTTCAAAAATCAAGCTCGGCGACGTGATCTTGTCCAATGATGgtaaactatttgtggtccagaaattttgttttggtctttggttatcaaaacacatgcaccacaagaaaaagaattactagaagtgtgtcaccaaatacacgctaatttatttgctcttttgcag
- - - - - - - - - - - CAAGCT