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gtaagaggctctgggatttagttcatgtgatgtaacctagtttattgttcatggttattgttgactcatgaatggttgttgtcactggatttttcttttgctaatcaggacctgtgcaaggttcactgatattctttcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATGATGGAATTAGGCCAGGGACCACAGCATCTGGATTGGCAAAGCTTAAAC
species | Oryza sativa |
transcript | LOC_Os02g57260.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|33793905|gb|CF322841.1|CF322841
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|29664436|gb|CB660711.1|CB660711
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|29663747|gb|CB660022.1|CB660022
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|29687731|gb|CB684006.1|CB684006
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATAAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|218500667|gb|FG957553.1|FG957553
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGATCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|38471798|gb|CF955929.1|CF955929
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGATCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|29667870|gb|CB664145.1|CB664145
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|33681865|gb|CF310104.1|CF310104
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|25800239|gb|CA756200.1|CA756200
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATEST: gi|58606960|gb|CK034993.1|CK034993
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGAT
EST: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAG ATTGTTGACCCCAAGACTGGAGAGGAAAA
genomic: CCACAGCTGCTGGGAAATTCAAAGATGAGATTGTTCCGGTGCCTACAAAGgtaagaggct ... tcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAA
tttcttttgctaatcaggacctgtgcaaggttcactgatattctttcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATGATGGAATTAGGCCAGGGACCACAGCATCTGGATTGGCAAAGCTTAAAC
tattctttcct CT-rich tract
atattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaggctctgggatttagttcatgtgatgtaacctagtttattgttcatggttattgttgactcatgaatggttgttgtcactggatttttcttttgctaatcaggacctgtgcaaggttcactgatattctttcctgtgcagATTGTTGACCCCAAGACTGGAGAGGAAAAGAAAGTTGTGATATCAGTTGATGATGGAATTAGGCCAGGGACCACAGCATCTGGATTGGCAAAGCTTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG