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gtaatactgtgtttgcggttatatcaccatatgaagacagggcttctttattatggacactggtttcatttgcttgattttacttttctgtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGCAGTGGCTGATGTTGCCGCGGCCATTAAAGCTGGGTTCTACGACATAG
species | Oryza sativa |
transcript | LOC_Os02g57260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|55408401|gb|CV720777.1|CV720777
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTEST: gi|33793905|gb|CF322841.1|CF322841
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTT
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|29664436|gb|CB660711.1|CB660711
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|218485684|gb|FG959002.1|FG959002
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGAGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|29687731|gb|CB684006.1|CB684006
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GGCTTTCTATGCTGGACCTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|38565849|gb|CK085302.1|CK085302
genomic: GGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|29667870|gb|CB664145.1|CB664145
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGEST: gi|58606960|gb|CK034993.1|CK034993
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
EST: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCG AAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
genomic: GCAGCGTGCAATCGAGTGCAGGGCTGCGGCTTTCTATGCTGGAGTTCCCGgtaatactgt ... gtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGG
tctttattatggacactggtttcatttgcttgattttacttttctgtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGCAGTGGCTGATGTTGCCGCGGCCATTAAAGCTGGGTTCTACGACATAG
gcttgat putative branch site (score: 31)
ttttacttttctgtc CT-rich tract
ttgattttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatactgtgtttgcggttatatcaccatatgaagacagggcttctttattatggacactggtttcatttgcttgattttacttttctgtcgatgcagAAAACGTTCCTGTTAGAACTGTCAACCGGCAATGTTCCTCTGGATTACAGGCAGTGGCTGATGTTGCCGCGGCCATTAAAGCTGGGTTCTACGACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG