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...tgtgcttagccatgtgaatatgccaccacgtatctgaatcgatcaacggatgtgatagatactcttctaaccactttattccatgtttatccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATACATACCCAGAGGACCTTCTTACTGTTGTTCTAAAG
species | Oryza sativa |
transcript | LOC_Os02g57260.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGACTTCCGCCTACGGGGACGACGTCGTCGTCGTCGC TGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATACEST: gi|218485684|gb|FG959002.1|FG959002
genomic: AGGACTTCCGCCTACGGGGACGACGTCGTCGTCGTCGCgtaagctttt ... ccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATAC
EST: GCCGCCTACCAGAGGACTTCCGCCTACGGGGACGACGTCGTCGTCGTCGC TGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGG-TTCAAGGATAC
genomic: GCCGCCTACCAGAGGACTTCCGCCTACGGGGACGACGTCGTCGTCGTCGCgtaagctttt ... ccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATAC
acggatgtgatagatactcttctaaccactttattccatgtttatccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATACATACCCAGAGGACCTTCTTACTGTTGTTCTAAAG
ttctaac putative branch site (score: 70)
tttatcc putative PPT
actttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcttagccatgtgaatatgccaccacgtatctgaatcgatcaacggatgtgatagatactcttctaaccactttattccatgtttatccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATACATACCCAGAGGACCTTCTTACTGTTGTTCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
-gtgctta
- - - - - catgtga
- - - - - - - - -atatgcc
- - - - - - - - - - - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccatg