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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcattttgcatttccttgtatatacagcatttggttcagtcttaacatgtgttcctgaatgctgtatgagatactccctctattccaaaatataa...

Basic information

species Oryza sativa
transcript LOC_Os02g57260.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G152442_T02 (Zea mays), 5'ss of exon 3
GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcattttgcatttccttgtatatacagcatttggtt------cagtctt--aacatgtgttcctgaatgctgtatgagat---actccctctattccaaaatataa-
|||| || ||||||||||| ||||||||||||||||||||||||||||  ||    || ||  | ||||| || || || |||||||||||||||||||    || | |||  |  | ||  ||  |  | ||  |||      |  | ||   |||  | || || ||| |  | | | ||   || |    |        |||| | 
GCAATTCCAGTCAAGTGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAAAGATCTGTGGCTCTTAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaatctgccctatcatgattagtccacgttgtgtttgtcgtcgattttcagacacattttgctcaattcctttttacatttaacgctgcttggcatcgtatattag

upper sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM5G848768_T03 (Zea mays), 5'ss of exon 10
GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcattttgcatttccttgtatatacagcatttggttca--------gtcttaacatgtgttcctgaatgctgtatgagat---actccctctattccaaaatataa-
|||| || ||||||||||| ||||||||||||||||||||||||||||  ||    || ||  ||||||| || || || |||||||||||||||||||    || | |||  |  ||||  ||  |  | ||  |||          ||    |||  | || || ||| |  | | | ||   || |    |  |      ||| | 
GCAATTCCAGTCAAGTGAGTGATGGTGCTGGAGCTGTTCTTCTCATGAAAAGATCTGTGGCTCTGAAGAAAGGGCTGCCCATTCTTGGTGTTTTCAGgttgcccaatctgccctatcttgattagtccacgttgtgtttgtcgtcgatgttcagacacattttgctcaattccttgttacatttaacgctgcttggtatcgtctattag

upper sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT1G04710.1 (Arabidopsis thaliana), 5'ss of exon 10
GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtg--ctgcattttgcatttccttgtatatacagcatttggttcagtct-taacatgtgttcctgaatgctgtatgagatactccctctattccaaaatataa
| || ||||| ||| | || || ||||||||||||||||| || ||||||||  | || || ||| |||| || ||||| ||||||||||| ||||||||  ||  ||  |  ||   ||    |   |    |||| |||| |   ||||| |   || || |  |  ||                             
GGAATTCTAGCCAATTAAGTGACGGTGCTGGAGCTGTTCTCCTTATGAGGAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGgtgggcttgatagttgatactctatattgacctttctttgcttcatttagtaaca-gcactcttggacacattacag--------------------------

upper sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv05s0051g00720.t01 (Vitis vinifera), 5'ss of exon 10
GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcattttgcatttccttgtatatacagcatttggttcagtct--taacatgtgttcctgaatgctgtatgagatactccctctattccaaaatataa
| || ||||| |||||||| |||||||||||||||||||| ||||||| |||    || || |||   || ||  | |||||||||||||| |||||||     | |    |  |   | | || | |    |   || ||     |  |    ||  ||  |   | |||| ||||     | || ||     |||||
GGAATTCTAGCCAAGTGAGTGATGGTGCTGGAGCTGTTCTCCTCATGAAGAGAAGTGTTGCAATGCGTAAAGGGTTACCTATTCTTGGTGTATTCAGgtatataaatccttagatgtatatgtacatatttatgaatttaggtaaatgcctctggtgtctttagcttatatg-gatatggtttatactcttgg-tataa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661674|gb|CB657949.1|CB657949
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29641413|gb|CB646420.1|CB646420
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29675787|gb|CB672062.1|CB672062
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGATGCTGTTGGAGTAGATCCCGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29687501|gb|CB683776.1|CB683776
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29661675|gb|CB657950.1|CB657950
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29657028|gb|CB653303.1|CB653303
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|27577585|gb|CB000280.1|CB000280
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|88307931|gb|CI646366.1|CI646366
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29670433|gb|CB666708.1|CB666708
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29687108|gb|CB683383.1|CB683383
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29670870|gb|CB667145.1|CB667145
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|218505530|gb|FG967454.1|FG967454
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCCGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29638251|gb|CB643260.1|CB643260
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29687732|gb|CB684007.1|CB684007
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29638249|gb|CB643258.1|CB643258
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29681654|gb|CB677929.1|CB677929
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|27577745|gb|CB000440.1|CB000440
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29672874|gb|CB669149.1|CB669149
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|86479233|gb|CI121866.1|CI121866
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29638749|gb|CB643758.1|CB643758
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29642434|gb|CB647441.1|CB647441
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29663748|gb|CB660023.1|CB660023
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29646005|gb|CB651012.1|CB651012
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29663747|gb|CB660022.1|CB660022
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29687731|gb|CB684006.1|CB684006
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29674399|gb|CB670674.1|CB670674
EST:     ACGTAGCGATGAAGAA-GGACTTTCCTATTCTGGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: ACGTAGCGATGAAGAAGGGAC-TTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|38471798|gb|CF955929.1|CF955929
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCCGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|87026915|gb|CI259568.1|CI259568
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29683240|gb|CB679515.1|CB679515
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29667870|gb|CB664145.1|CB664145
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGA
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGA
EST: gi|33681865|gb|CF310104.1|CF310104
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCCTGCTGTTATGGGTGTTGGTCCTG
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCC-TGCTGTTATGGGTGTTGGTCCTG
EST: gi|29683241|gb|CB679516.1|CB679516
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29664437|gb|CB660712.1|CB660712
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29663245|gb|CB659520.1|CB659520
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29676716|gb|CB672991.1|CB672991
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|25800239|gb|CA756200.1|CA756200
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|86493712|gb|CI136345.1|CI136345
EST:     TCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: TCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|86477418|gb|CI120051.1|CI120051
EST:     AAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGC-TTGCTTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTG
genomic: AAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGC-TGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTG
EST: gi|29646729|gb|CB651736.1|CB651736
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29645372|gb|CB650379.1|CB650379
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
EST: gi|29670912|gb|CB667187.1|CB667187
EST:     AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAG                         GAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC
genomic: AGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 73 (downstream exon)
Score: 83

GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcatt ... catcatttagGAGCTTTGCTGCTGTTGGAGTAGATCCTGCTGTTATGGGTGTTGGTCCTGCAGTAGCAATACCAGCTGCAGTGAAGTCTGCTGGACTCCAGATTGAAGAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAACTCTAGTCAAGTGAGCGATGGTGCTGGAGCTGTTCTTCTCATGAGGAGGGACGTAGCGATGAAGAAGGGACTTCCTATTCTTGGTGTTTTCAGgtgctgcattttgcatttccttgtatatacagcatttggttcagtcttaacatgtgttcctgaatgctgtatgagatactccctctattccaaaatataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc