1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTCCAGAAAGCACAGGATTGTCTTTTGCCCATGGGGATAACGTCCGAAAATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcacttgcatacattctgtttgtgttttttcttcccactgcttccttttactcaaaacactgtcgaaatttttgtttttaacag
species | Oryza sativa |
transcript | LOC_Os02g57260.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|33793905|gb|CF322841.1|CF322841
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCT-ATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|29664436|gb|CB660711.1|CB660711
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|218485684|gb|FG959002.1|FG959002
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCAAAGCTGCTGGGAAATTCAAAEST: gi|29663747|gb|CB660022.1|CB660022
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|29687731|gb|CB684006.1|CB684006
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|218500667|gb|FG957553.1|FG957553
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|38471798|gb|CF955929.1|CF955929
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|38565849|gb|CK085302.1|CK085302
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|29667870|gb|CB664145.1|CB664145
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|33681865|gb|CF310104.1|CF310104
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|25800239|gb|CA756200.1|CA756200
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: GCAGGATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAAEST: gi|58606960|gb|CK034993.1|CK034993
genomic: GCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
EST: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGTATCAGGCTGCT GCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
genomic: ATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcact ... tttttaacagGCTGAGTCTCATAGGAGGGCTGCTGCAGCCACAGCTGCTGGGAAATTCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCAGAAAGCACAGGATTGTCTTTTGCCCATGGGGATAACGTCCGAAAATGTTGCGCACCGATATGGTGTAACAAGACAAGAGCAGGATCAGGCTGCTgtgagtcacttgcatacattctgtttgtgttttttcttcccactgcttccttttactcaaaacactgtcgaaatttttgtttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT