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GATGCAAAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccgcaaccttggttgggagaacgttcctgcattattatttgctcgttataaatgcttacaacccaatattgtaaaaaccgttctctgcag
species | Oryza sativa |
transcript | LOC_Os02g56850.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|29670415|gb|CB666690.1|CB666690
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|58586132|gb|CF984440.1|CF984440
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: ATTAACTTCAACTGGAAAAAGCTGCTGGAAAATAAG ACTCAAGAAATGGTGAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|88430778|gb|CI596892.1|CI596892
genomic: ATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTACACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|2443112|gb|C74883.1|C74883
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGACTAAATEST: gi|88416046|gb|CI594158.1|CI594158
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGEST: gi|29680732|gb|CB677007.1|CB677007
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAG
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|88407233|gb|CI583691.1|CI583691
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAC ACTAAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGAAATEST: gi|29675048|gb|CB671323.1|CB671323
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAATEST: gi|88417209|gb|CI576283.1|CI576283
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTGTTAGACTAAATGGAGTATACCAGAGGATTCTTGGCAAT
EST: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAG ACTCAAGAAATTG
genomic: AAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccg ... ttctctgcagACTCAAGAAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGCAAAGAATTTTGGGTGGGAAATCAATGGGGACATTAACTTCAACTGGAAAAGGCTGCTGGAAAATAAGgtcagagccgcaaccttggttgggagaacgttcctgcattattatttgctcgttataaatgcttacaacccaatattgtaaaaaccgttctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA