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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatggaccataaacattctagtaatggagcctatcagtgtcgtcattctttatagttcctgttctggtgaagtttcctgactcggctcactttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG

Basic information

species Oryza sativa
transcript LOC_Os02g56850.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56850.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM5G806449_T03 (Zea mays), 3'ss of exon 14
----------------------------------------------------------------------------------tcatggaccata---aacattctagtaatg----gagcctatcagtgt--cgtcattctttatagttcctgt---tctggtgaagtttcctgactcggctcactttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG
|| || |||| | || ||| | | ||||| || | |||| ||||| || | || | | || | | |||| | | |||| || || ||||||||||| ||||||||||||| |||||| | || ||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||
gtaagcatagtagagcatgcctgttagattttcttgtctgctccatttgcaggcttacaccctgtgagctctgacatatatgtcttgtaccacatccaaagatctgactgttccctgttttcttcagtcatgcgctctgctttgtagtttctatatctcctatagaagtttgtaattcggtcta-tgttttcagGCGCCAGGAGAAGACTATCATGAAACTGGTAGTTGATGCTGAAACTGACAAAGTACTTGGTGCATCCATGTGTGGACCAGACGCACCTGAAATTATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86251596|gb|CI016885.1|CI016885
EST:     CTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|58692171|gb|CK080858.1|CK080858
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88848384|gb|CI086906.1|CI086906
EST:     ACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: ACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|218503186|gb|FG945930.1|FG945930
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88254847|gb|CI351475.1|CI351475
EST:     CAGCTTCAACGCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86431565|gb|CI085176.1|CI085176
EST:     CACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|9886227|gb|AU102120.1|AU102120
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88217368|gb|CI217217.1|CI217217
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86522150|gb|CI162356.1|CI162356
EST:     TTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|89184506|gb|CI047071.1|CI047071
EST:     CACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|29670416|gb|CB666691.1|CB666691
EST:     GTTCTTGTTTGCACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|27578226|gb|CB000921.1|CB000921
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|29675049|gb|CB671324.1|CB671324
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|18385573|gb|BM418772.1|BM418772
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCC-A                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|87015137|gb|CI273535.1|CI273535
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86594898|gb|CI258152.1|CI258152
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|33675534|gb|CF303773.1|CF303773
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88841227|gb|CI080681.1|CI080681
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCCA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|58686026|gb|CK074713.1|CK074713
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCCATGAAGAACAGCATATCCCA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|89198081|gb|CI117559.1|CI117559
EST:     GAACAGCATATCCAA                         TCGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|89185441|gb|CI051769.1|CI051769
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCGATGAAGAACAGCATATCCCA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|29625188|gb|CB630199.1|CB630199
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88964176|gb|CI045369.1|CI045369
EST:     CCAGCTTCAACCCAATGAAGAACAGCATATCCAC                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86603354|gb|CI112114.1|CI112114
EST:     TCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86426951|gb|CI072048.1|CI072048
EST:     CTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: CTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|89187152|gb|CI047219.1|CI047219
EST:     TTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88966781|gb|CI366004.1|CI366004
EST:     GTTCTTGTTGACACTTCCACCTTCCACCCGATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86594937|gb|CI258191.1|CI258191
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|87014199|gb|CI273389.1|CI273389
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|396941644|gb|HO188301.1|HO188301
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88845181|gb|CI084106.1|CI084106
EST:     GTTCTNGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|218481326|gb|FG969724.1|FG969724
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86430740|gb|CI083163.1|CI083163
EST:     GTTCTNGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86872978|gb|CI326975.1|CI326975
EST:     TTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88955687|gb|CI091976.1|CI091976
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88849681|gb|CI089787.1|CI089787
EST:     ACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: ACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88838759|gb|CI376297.1|CI376297
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88848329|gb|CI086851.1|CI086851
EST:     TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88906458|gb|CI375530.1|CI375530
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86896270|gb|CI330158.1|CI330158
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88955638|gb|CI091927.1|CI091927
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|86526760|gb|CI166966.1|CI166966
EST:     TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88253128|gb|CI351754.1|CI351754
EST:     CAGCTTCAACCCAATGAAGAACAGCATATCCAAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATA
genomic: CAGCTTCAACCCAATGAAGAACAGCATATCC-AAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATA
EST: gi|86845452|gb|CI340491.1|CI340491
EST:     TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCCTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: TTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88257486|gb|CI359874.1|CI359874
EST:     AGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: AGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|89188782|gb|CI048518.1|CI048518
EST:     GTTCTTGTTTACACTTCCAGCTTCAACCCCATGAAGAACAGCATATCCCA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
EST: gi|88248383|gb|CI248232.1|CI248232
EST:     GTTCTTGTTAACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAA                         ACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA
genomic: GTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 56

CAGTAGTGGGCTTGAGTGAACAGCAGGCTTTGGAGGAAGCCAAGAGCGATGTTCTTGTTTACACTTCCAGCTTCAACCCAATGAAGAACAGCATATCCAAgtaagtatca ... ctttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttatagttcctgttctggtgaagtttcctgactcggctcactttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG
                                         ctcacttttttt  CT-rich tract
 acttttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatggaccataaacattctagtaatggagcctatcagtgtcgtcattctttatagttcctgttctggtgaagtttcctgactcggctcactttttttagACGGCAGGAGAAGACCGTCATGAAACTGGTGGTTGATTCAGAGACTGATAAAGTACTTGGTGCATCAATGTGTGGACCAGATGCACCAGAGATTATCCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-catggac
- - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - - cattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgact