1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagtgactacagtgactcataatccccttgtaaattgggtgtgttcaaatttctttgtttctgtgtaaccagcaactttactttaatctttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC
species | Oryza sativa |
transcript | LOC_Os02g56850.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|218503186|gb|FG945930.1|FG945930
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|9886227|gb|AU102120.1|AU102120
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: CGGATAAATTTAACACCCTGTTGCACTGATGGAGGCNCCCTGCTTTTTCT -AAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACCAGAGATGTACEST: gi|27578226|gb|CB000921.1|CB000921
genomic: CGGATAAATTTAACA-CCTGTTGCACTGATGGAGGCTACCTGC-TTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTA-CAGAGATGTAC
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|29675049|gb|CB671324.1|CB671324
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACCCCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|87015137|gb|CI273535.1|CI273535
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|33675534|gb|CF303773.1|CF303773
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|29625188|gb|CB630199.1|CB630199
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTEST: gi|4714976|gb|AU056093.1|AU056093
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: CGGATAAATTTTAACACCTGTTTGCACTGATGGAGGCTACCTGCNTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCNGATTACAGANATGTACCTEST: gi|86594937|gb|CI258191.1|CI258191
genomic: CGGATAAATTT-AACACCTGTT-GCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: CGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTATCTEST: gi|218481326|gb|FG969724.1|FG969724
genomic: CGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
EST: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCT AAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
genomic: ACCGGATAAATTTAACACCTGTTGCACTGATGGAGGCTACCTGCTTTTCTgtaagtgact ... ttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCT
tcaaatttctttgtttctgtgtaaccagcaactttactttaatctttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC
tcttt CT-rich tract
aactttactttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactacagtgactcataatccccttgtaaattgggtgtgttcaaatttctttgtttctgtgtaaccagcaactttactttaatctttaattgcagAAAACTGTGTTTGGTGGCCAGCCAACTAAACCTGATTACAGAGATGTACCTTGTGCTGTTTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT