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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttatcttgggggaagctgcttattttctatctatgatcttccaacttaaatcacccttcaggtgtctgattctctataattgtgcttcggcaaa...

Basic information

species Oryza sativa
transcript LOC_Os02g17500.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G412899_T01 (Zea mays), 5'ss of exon 3
GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttatcttgggggaagctgcttattttctatctatgatcttccaacttaaatcaccct-tcaggtgtctgat-tctctataattgtgcttcggcaaa
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GTGGAGAGTGTGTTTCTGGGTTGCCGTTATCCCAGCAACTTTACAAGCTCTCGGTATGGAGTTTTGTGCTGAGAGCCCTCAGTGGCTTTATAAGgtacttctgctttgaacaatgaacattgcttgctttttatgctatgtt--tctgatttatcaagtcaaacatgcaatctctctgcatttgcgggggaatgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643521|gb|CB648528.1|CB648528
EST:     AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|88362011|gb|CI607011.1|CI607011
EST:     AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|218499348|gb|FG943597.1|FG943597
EST:     AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|88827907|gb|CI778472.1|CI778472
EST:     GTGGCTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: GTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|88732502|gb|CI755679.1|CI755679
EST:     GTGGTTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: GTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|66922886|gb|CX109734.1|CX109734
EST:     AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAG                         TGTGGAAGAACAACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|218498315|gb|FG958350.1|FG958350
EST:     AAGCTCTTGGAATGGAGTTCTGCGCTGAGAGCCCCCAGTGGCTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: AAGCTCTTGGAATGGAGTTCTGTGCTGAGAGCCCCCAGTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
EST: gi|88827571|gb|CI778136.1|CI778136
EST:     GTGGTTGTATAAG                         TGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT
genomic: GTGGCTGTATAAGgtgtgtttat ... ttttattcagTGTGGAAGAACGACTGAAGCAGAGATACAATTTGAAAAACTTCTAGGTCCT