1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgcgtgccatccattttctcatttcttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGGGAACACCCTCGCCGAAG
species | Oryza sativa |
transcript | LOC_Os02g17500.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTAC-ACTCCGG GGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGAGCTCGGGTTCGCEST: gi|88360230|gb|CI610344.1|CI610344
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGC
EST: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG GGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGGEST: gi|88364960|gb|CI616379.1|CI616379
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
EST: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG GGTCGTGAACGAGCCGATCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
gttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGGGAACACCCTCGCCGAAG
aactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgccatccattttctcatttcttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGGGAACACCCTCGCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA