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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actctttaattgttcctgacaattatactttactggctcattaagtacaaatgttatggtaagtctaccagtttcttatagttgagtgcttctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGC

Basic information

species Oryza sativa
transcript LOC_Os02g17500.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G412899_T04 (Zea mays), 3'ss of exon 11
----actctttaattgttcctgacaattatactttactggctcattaagtacaaatgttatggtaagtcta----ccagtttcttatagttgagtgcttctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGC
     | |     || |   |||||||| |   ||  |   | ||  ||| ||     ||| |||  | |     |||||| ||||   ||  |      |||| ||||||||||||| |||||||  |||||||||| || || ||||||||||||||||||||||||||||| || ||||| || || |||||||||||||| |||
catagcacacctgttctgtttgacaattgtgtcttttt---ttat-gagtgcagcaactattgtacatttttggtccagttacttacgattagga----tttttgcagGTTTGTCTTGTCATTTTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTGCCTGAGATTTTCCCTAATAAAATCCGAGCTAAGGCTATGGCTCTCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218501803|gb|FG948060.1|FG948060
EST:     CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT                         GTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTT
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTT
EST: gi|218496023|gb|FG951379.1|FG951379
EST:     CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT                         GTTTGTCTTGAC
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaatgttatggtaagtctaccagtttcttatagttgagtgcttctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGC
                                         tgcttctttttc  CT-rich tract
                          tttcttata  TA-rich tract