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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCAACCTGCCTTGGAATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgctttcttctgtagctctctacatgttttgtgtagttagtaaatctgatgcatctaactttatcctttgctattaacag

Basic information

species Oryza sativa
transcript LOC_Os02g17500.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G412899_T01 (Zea mays), 5'ss of exon 2
CAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCAACCTGCCTTGGAATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgctttcttctgtagctctctacatgttttgtgtagttagtaaatctga--tgcatcta----actttatcctttgctattaacag
|||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||| || || |||||||||||||| || |||||||||||||||| ||| ||| ||||   |||  || ||||||  |  || ||||| ||  | |||  |  ||||     | | | |   ||||  ||  |||
CAGTGAGGGGTACATATGGTAGCTTTGTTCAGATTGCAACCTGCCTTGGAATTATAGTATCACTACTCATTGGTACACCTGTCAAAGATATTGATAGATGgtgagaagctctcttt--tagtcctttacatgcctcttgaagttaatatttgtgaaatttatctgtaccaatgtttttattgccgttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643521|gb|CB648528.1|CB648528
EST:     ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATG                         GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
genomic: ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgct ... ctattaacagGTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
EST: gi|88362011|gb|CI607011.1|CI607011
EST:     ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATG                         GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
genomic: ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgct ... ctattaacagGTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
EST: gi|218499348|gb|FG943597.1|FG943597
EST:     ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATG                         GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
genomic: ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgct ... ctattaacagGTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
EST: gi|218498315|gb|FG958350.1|FG958350
EST:     ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATG                         GTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT
genomic: ATCGTAGTATCTCTCCTAATTGGTACACCTGTGAAGGATATTGATAGATGgttagatgct ... ctattaacagGTGGAGGGTGTGTTTCTGGGTTGCAGCTGTTCCAGCAACTTTACAAGCTCT