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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgccatccattttctcatttcttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g17500.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G412899_T03 (Zea mays), 5'ss of exon 2
-CGAAAATGGCGG--ACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgccatccattttctcatttc--ttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtt-tggtgcag
  ||    |||||   ||||| ||  |||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||| || |||||||||||||||||| | | |         ||||    ||| || |||   |  |   | || || |  ||   | || | |  | |||  | | ||||  ||  ||||
CGGACGGCGGCGGCAGCGGCGCGGGGCCGTCGTGGCGCATGTCGTTGCCGCATGTCTGTGTCGCCACGCTCACCTCGTTCCTCTTTGGATACCACTCCGGgtgcgtggccttccgcccacgttttcagcacttttgattgctctattgccctcatctgaaagtc--gtgctcatttg-gtgccttgatggtgatgacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88398510|gb|CI595911.1|CI595911
EST:     CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTAC-ACTCCGG                         GGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGAGCTCGGGTTCGC
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGC
EST: gi|88360230|gb|CI610344.1|CI610344
EST:     CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG                         GGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
EST: gi|88364960|gb|CI616379.1|CI616379
EST:     CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG                         GGTCGTGAACGAGCCGATCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG