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...aaaatattgtgaatcaagtgctctttggttgatcaagctggaatttaacaatttttttttgggtttcacaaagcttaatcttcatttaattatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGGGCCCAGCTGTCTGTAT
species | Oryza sativa |
transcript | LOC_Os01g71590.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAGAAAAG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAEST: gi|33801197|gb|CF326472.1|CF326472
genomic: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
EST: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNNNNNG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAEST: gi|27554312|gb|CA998212.1|CA998212
genomic: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
EST: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNNNNNG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAEST: gi|29683285|gb|CB679560.1|CB679560
genomic: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
EST: CAACCGTTGATGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNNNNNG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAEST: gi|88845066|gb|CI083991.1|CI083991
genomic: CAA-GGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
EST: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNNNNNG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAEST: gi|29680927|gb|CB677202.1|CB677202
genomic: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
EST: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNNNNNG GCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
genomic: CCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAGgtaattgtat ... tatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGA
taacaatttttttttgggtttcacaaagcttaatcttcatttaattatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGGGCCCAGCTGTCTGTAT
ttaatcttcatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatattgtgaatcaagtgctctttggttgatcaagctggaatttaacaatttttttttgggtttcacaaagcttaatcttcatttaattatgggacagGCTGCGAGAAAAAAGGCACTTAAAGGATGGGATCCAACATTCATAAAGAGAAATTTTTTCCCCTACTGGAGATCAGTATTAGGGGCCCAGCTGTCTGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG