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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggatcattgtttaccaattgtatattatattatattactagcagtacaaagttatgatattcttttgaatgtaactagagattaatcctccttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGAGCAACCGTAGATAA

Basic information

species Oryza sativa
transcript LOC_Os01g71590.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58600749|gb|CK011277.1|CK011277
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88406306|gb|CI596433.1|CI596433
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|29680926|gb|CB677201.1|CB677201
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58604063|gb|CK014591.1|CK014591
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88361566|gb|CI605347.1|CI605347
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88357235|gb|CI616122.1|CI616122
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88356752|gb|CI619238.1|CI619238
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88357291|gb|CI622140.1|CI622140
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88399228|gb|CI618418.1|CI618418
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATTGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88422035|gb|CI611655.1|CI611655
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88729493|gb|CI753003.1|CI753003
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTNCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58658388|gb|CK047068.1|CK047068
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58663381|gb|CK052067.1|CK052067
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88350901|gb|CI620561.1|CI620561
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88301553|gb|CI597246.1|CI597246
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|29655883|gb|CB652158.1|CB652158
EST:     CAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: CAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88373323|gb|CI614659.1|CI614659
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58669703|gb|CK058389.1|CK058389
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88359595|gb|CI621126.1|CI621126
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88341910|gb|CI643054.1|CI643054
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58668871|gb|CK057557.1|CK057557
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|33673283|gb|CF301522.1|CF301522
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|117240086|gb|CT848247.1|CT848247
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88300596|gb|CI587400.1|CI587400
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88719949|gb|CI741884.1|CI741884
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88695274|gb|CI739312.1|CI739312
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88351158|gb|CI623380.1|CI623380
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|2309642|gb|C25797.1|C25797
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTTCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58683986|gb|CK072673.1|CK072673
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88402838|gb|CI613286.1|CI613286
EST:     AAGCCCCAATCTTTATCATAGCAGGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88405812|gb|CI609711.1|CI609711
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         G
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacag-
EST: gi|88405812|gb|CI609711.1|CI609711
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         G
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacag-
EST: gi|88405812|gb|CI609711.1|CI609711
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         G
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacag-
EST: gi|88727250|gb|CI750905.1|CI750905
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58663657|gb|CK052343.1|CK052343
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88717951|gb|CI739463.1|CI739463
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88434198|gb|CI589263.1|CI589263
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58655266|gb|CK043946.1|CK043946
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88328388|gb|CI651402.1|CI651402
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88423769|gb|CI617121.1|CI617121
EST:     AAGCCCCAGTCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|569899|gb|D40748.1|D40748
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88745414|gb|CI768774.1|CI768774
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58667427|gb|CK056113.1|CK056113
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58674390|gb|CK063076.1|CK063076
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58661318|gb|CK049998.1|CK049998
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATGCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88300028|gb|CI580089.1|CI580089
EST:     AAGCCCAAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88406465|gb|CI598958.1|CI598958
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88371341|gb|CI600189.1|CI600189
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGGCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|33676592|gb|CF304831.1|CF304831
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88354687|gb|CI613965.1|CI613965
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88362485|gb|CI623825.1|CI623825
EST:     AAGCCCCAATCTTTATCATAGCGAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88294140|gb|CI667114.1|CI667114
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88398580|gb|CI598545.1|CI598545
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88294643|gb|CI602363.1|CI602363
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGGCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGGCAGATGCTTTGA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88405905|gb|CI591300.1|CI591300
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88421803|gb|CI621447.1|CI621447
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88361001|gb|CI625307.1|CI625307
EST:     AAGCCCCAATCTTTATCATAGCGAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88315686|gb|CI617159.1|CI617159
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCAGATCATTTTCTGCCCAGATGCTTTC
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCC-AGATGCTTTC
EST: gi|58658133|gb|CK046813.1|CK046813
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACAGTATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTC
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACA-TATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTC
EST: gi|88695968|gb|CI739543.1|CI739543
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88358682|gb|CI649231.1|CI649231
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88316868|gb|CI624310.1|CI624310
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|33676340|gb|CF304579.1|CF304579
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88397281|gb|CI580791.1|CI580791
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGGCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58660697|gb|CK049377.1|CK049377
EST:     AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGCCCCAATCTTTATCATAGCAAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|88336970|gb|CI627050.1|CI627050
EST:     GAGGTCATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
genomic: GAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA
EST: gi|58676608|gb|CK065295.1|CK065295
EST:     AAGGAGG-CATGTCGGAATCGGCCCTCG                         ACAAACATATAGTGGTGAAAATTCCCGATCATGTTCTGCCAGATGCTTTCA
genomic: AAGGAGGTCATGTCGGAATCGGCCCTCGgtaatagtta ... cttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaaagttatgatattcttttgaatgtaactagagattaatcctccttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGAGCAACCGTAGATAA
                                  gattaat  putative branch site (score: 3)
                                        tcctccttgtt  CT-rich tract
      ttatgatattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggatcattgtttaccaattgtatattatattatattactagcagtacaaagttatgatattcttttgaatgtaactagagattaatcctccttgttacagACAAACATATAGTGGTGAAAATTCCCGATCATTTTCTGCCAGATGCTTTCATAGGAGAAAGTGTTGGTAAAGGTAAAGAAGATGGAGCAACCGTAGATAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA