1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaacgagatgtaataggaagtaatttttcactgcttgcttgcatacaaatgctcaaagtcatttagatttcattcctttgccttctttttattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATGAAGAATGACAAGCTTGTAGAATCCG
species | Oryza sativa |
transcript | LOC_Os01g71590.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATG AAAGNNNNNNNGGATACAGTTAGACTGCTTGCTGAAAEST: gi|58692413|gb|CK081100.1|CK081100
genomic: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGgtttgtttca ... tattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAA
EST: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATG AAGGNNNNNNNGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAEST: gi|58688942|gb|CK077629.1|CK077629
genomic: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGgtttgtttca ... tattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTA
EST: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATG AAGGNNNNNNNGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAEST: gi|58656260|gb|CK044940.1|CK044940
genomic: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGgtttgtttca ... tattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTA
EST: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATG AAGGNNNNNNNGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTA
genomic: ATGAGGATTATATCTACAAGCTCATTCATCTGCTGTGTCTACCTGAGATGgtttgtttca ... tattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTA
acaaatgctcaaagtcatttagatttcattcctttgccttctttttattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATGAAGAATGACAAGCTTGTAGAATCCG
tttcattcctttgcct CT-rich tract
atttagatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacgagatgtaataggaagtaatttttcactgcttgcttgcatacaaatgctcaaagtcatttagatttcattcctttgccttctttttattgtgcagAAGGTTTTTTTGGATACAGTTAGACTGCTTGCTGAAAAAACAGATAATCTAGCTGATGAGCTCTGGAATTACATGAAGAATGACAAGCTTGTAGAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT