1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTTTCTATGCAAATGTTTGTTGTTTATTAATTATTTCTTAAACTTGTTATTGAAGCTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgtttattatttaagtaactgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatag
species | Oryza sativa |
transcript | LOC_Os01g71590.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAGEST: gi|33801197|gb|CF326472.1|CF326472
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: GATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|27554312|gb|CA998212.1|CA998212
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|88845066|gb|CI083991.1|CI083991
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: CGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|29680927|gb|CB677202.1|CB677202
genomic: CGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTCTATGCAAATGTTTGTTGTTTATTAATTATTTCTTAAACTTGTTATTGAAGCTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgtttattatttaagtaactgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG