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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctacttaaattggtttttattctctgcttcctctttacacatttactgtatgttcaattcaattaggaaagaactgaaacagaagtgaaattagttttgatatatgaggataattagtggttagttttatgctctgaaattctactgatgcatgtttgtgttcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTGCTCATCCCACCATTCATAATATGGAAATACATGTACGGCTAGACATGTC

Basic information

species Oryza sativa
transcript LOC_Os01g67250.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793808|gb|CF322791.1|CF322791
EST:     CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCT                         GCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
genomic: CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCTgtaagctact ... tcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
EST: gi|58656617|gb|CK045297.1|CK045297
EST:     CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCT                         GCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
genomic: CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCTgtaagctact ... tcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
EST: gi|58590475|gb|CF988783.1|CF988783
EST:     CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCT                         GCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
genomic: CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCTgtaagctact ... tcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
EST: gi|29625771|gb|CB630782.1|CB630782
EST:     CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCT                         GCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG
genomic: CGAGAAAGGTTCCTTAGAAGATGATATATTCCATGAGCCCATCTTTTCCTgtaagctact ... tcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggttagttttatgctctgaaattctactgatgcatgtttgtgttcccaactagGCATGTGCAAGGAGCTAAACGATTTGCAATATCGGACCTATGAGATTGTTGCTCATCCCACCATTCATAATATGGAAATACATGTACGGCTAGACATGTC
                          tactgat  putative branch site (score: 2)
                                          tgttccc  putative PPT
     tagttttat  TA-rich tract