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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCCCCTGAAGAATCAACTGCTCCTTATCATTCTATAACACTTCCAGAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcattggttttgttgtgataagtttgttatttaaaatgtgcccttcaactctcttaagattttccaccatgatccag

Basic information

species Oryza sativa
transcript LOC_Os01g67250.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G421829_T01 (Zea mays), 5'ss of exon 3
ATCTTCCCCCTGAAGAATCAACTGCTCCTTATCATTCTATAACACTTCCAGAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcattggttttgttgtgataagtttgttatttaa-aatgtgcccttcaactctctt--aagattttccaccatgatccag
|||| || ||||| || ||||||||||| ||||| |||||||| || || ||||||||| |||| |||||||||||| | || || ||||  ||||| ||||||       |  | |||| | |||||||   ||||||  ||||  |  ||||  | | |   || | |||   |  ||||||||
ATCTACCTCCTGAGGAGTCAACTGCTCCATATCACTCTATAACTCTGCCTGAGACATTCGATCTTGATGATTTTGAACTGCCAGAAGCTGTGTTTCAAGGgtaaagctgcagcctctgtt-taataagttcactatttagtaatgctctgttcagttttttctgaacactttttgctttgatccag

upper sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G093119_T01 (Zea mays), 5'ss of exon 3
ATCTTCCCCCTGAAGAATCAACTGCTCCTTATCATTCTATAACACTTCCAGAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcattggttttgttgtgataagtttgttatttaa-aatgtgcccttcaactctctt---aagattttccaccatgatccag
||||||| |||||||| ||||||||||| ||||| |||||||| || || ||||||||| |||| |||||||||||| | || || ||||| ||||| ||||||   |   | || ||| |  | |||||   ||||||| ||||     ||||| ||| ||   || | ||||| | || ||||||
ATCTTCCTCCTGAAGAGTCAACTGCTCCGTATCACTCTATAACTCTGCCTGAGACATTCGATCTTGATGATTTTGAACTGCCAGAAGCTGCGTTTCAAGGgtaaagccgcagcttctgtcg-aagaagttcactatttaagaatgctttattcaattcttttctgaacactttccgctattatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630217|gb|CB635226.1|CB635226
EST:     GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGG                         TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAA
genomic: GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcat ... catgatccagTGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAA
EST: gi|88381570|gb|CI682231.1|CI682231
EST:     GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGG                         TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACC
genomic: GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcat ... catgatccagTGACATTGATCATCATGTAAGCACAAAAGAACAGATCACC
EST: gi|29678404|gb|CB674679.1|CB674679
EST:     GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGG                         TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAA
genomic: GAGACATTCCATCTGGATGATTTTGAATTACCGGAGGCTGCATTTCAGGGgtaagttcat ... catgatccagTGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAA