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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATGgttggtccttctgtattcacgccatctacttttcgtcatctacttttcaaaatttgaagccagccatttaatcatattaagcatatctctatttacag

Basic information

species Oryza sativa
transcript LOC_Os01g67250.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G093119_T01 (Zea mays), 5'ss of exon 4
TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATGgttggtcct-tctgtattcacgccatctacttttcgtcatctacttttcaaaatttgaagccagccatttaatcatattaagcatatctctatttacag
 |||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||| ||||||||||||||| ||| | | |||  |   | | |  | |||| |  ||   || |||| || |  |  |  | || | ||   |||               
CGACACTGATCATCATGTGAGCACAAAAGAACAGATCACTTTGCAAGACAACCCAGAGAAAACAGGGTATTCAACATCCCAGTTTGGCCTAGATGgttggtcctgtctctctccacatc--ttgcctgacttcatttctttaataacattttaaccatggtaaattattaaat-gtgcag--------------

upper sequence: LOC_Os01g67250.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G421829_T01 (Zea mays), 5'ss of exon 4
TGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATGgttggtccttctgtattcacgccatctacttttcgtcatctacttttcaaaatttgaagccagccatttaatcatattaagcatatctctatttacag
 || | |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||   |||| |     |||  || | |  | | ||   | || || |    |  | | | ||   |   ||||||   |              
CGATACTGATCATCATGTGAGCACAAAAGAGCAGATCACTTTGCAAGACAACCCAGAGAAAACAGGATATTCAACATCCCAGTTTGGCCTAGATGgttggtc---ctgtgtctgt-ccacatattgtctgacttcatttctttaataac--attctaacaatggtaaagtattaaatgtgcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630217|gb|CB635226.1|CB635226
EST:     AGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATG                         AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG
genomic: AGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATGgttggtcctt ... ctatttacagAAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG
EST: gi|29678404|gb|CB674679.1|CB674679
EST:     AGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATG                         AAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG
genomic: AGACAACCCAGAGAAAACTGGATACTCAACATCCCAATTTGGCTTAGATGgttggtcctt ... ctatttacagAAAGATTTGGTGATGGCAATTCTTCACATATTGGGTTGGATTTGGAAGAG