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gtaaattgactattcgttgattttgtttttaaagtcattgtatttgataaaaaaaaggtgaaatcatctgctttttgattatttgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGTGAATGTAGAAGCATCAACACAAGAAATGGCATCTAACGATATACCAAG
species | Oryza sativa |
transcript | LOC_Os01g67250.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAG GGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGEST: gi|58695636|gb|CK084323.1|CK084323
genomic: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGgtaaattgac ... tgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
EST: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAG GGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGEST: gi|29629879|gb|CB634888.1|CB634888
genomic: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGgtaaattgac ... tgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
EST: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAG GGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGEST: gi|33381714|gb|CF197057.1|CF197057
genomic: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGgtaaattgac ... tgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
EST: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAG GGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGEST: gi|88255419|gb|CI354243.1|CI354243
genomic: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGgtaaattgac ... tgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
EST: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAG GGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
genomic: TGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGgtaaattgac ... tgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAG
tgtatttgataaaaaaaaggtgaaatcatctgctttttgattatttgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGTGAATGTAGAAGCATCAACACAAGAAATGGCATCTAACGATATACCAAG
ttttgat putative branch site (score: 4)
tttgtttt putative PPT
tttttgattatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgactattcgttgattttgtttttaaagtcattgtatttgataaaaaaaaggtgaaatcatctgctttttgattatttgttttgcagGGGGCGGTCAGCATGCACCTCATGCTATCTTAGCAACTGCAGATTCCCAAGTGAATGTAGAAGCATCAACACAAGAAATGGCATCTAACGATATACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA