Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattgtcaaactagacctgcaatggtagcttaaattgttttctcgaatcatttctgttgacattatccttggtacttattgtgttctgttccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGATTTTGTCAGCGTTAAGCCAGGGCCAAAGCTCCTGAAGTCAGATTTCTAGA

Basic information

species Oryza sativa
transcript LOC_Os01g67250.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88594398|gb|CI714356.1|CI714356
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88665659|gb|CI715815.1|CI715815
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|38472419|gb|CF956550.1|CF956550
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88674982|gb|CI729095.1|CI729095
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|87027299|gb|CI269974.1|CI269974
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88256659|gb|CI359047.1|CI359047
EST:     ATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: ATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88954679|gb|CI720194.1|CI720194
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTCTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86884844|gb|CI314420.1|CI314420
EST:     GACTA-GAAAGAAGCATCAA-GATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: GACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88673534|gb|CI727647.1|CI727647
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88670952|gb|CI725068.1|CI725068
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88905390|gb|CI712689.1|CI712689
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88667453|gb|CI722192.1|CI722192
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88674127|gb|CI728240.1|CI728240
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88905600|gb|CI712899.1|CI712899
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88594913|gb|CI715069.1|CI715069
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88905432|gb|CI712731.1|CI712731
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTCTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86871041|gb|CI328243.1|CI328243
EST:     CAAGGATGTTTTTTGAGACATTG                         CTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: CAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88675277|gb|CI728496.1|CI728496
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86852863|gb|CI323172.1|CI323172
EST:     TAAG-GGGAAGACTA-GAAAGAAGCATCAAGGATGTTTTTTGAGACAGT-                         GTTCTGACAACAAA-GACTTCATAAGTGT-GATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|25798389|gb|CA754350.1|CA754350
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88672961|gb|CI727076.1|CI727076
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|89182974|gb|CI003038.1|CI003038
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCCAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|87014053|gb|CI273243.1|CI273243
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|218494111|gb|FG958756.1|FG958756
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGGATCAACCAAACTCCTTTGA
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGG-ATCAACCAAACTCCTTTGA
EST: gi|86889872|gb|CI333523.1|CI333523
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88665536|gb|CI715692.1|CI715692
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88676688|gb|CI730801.1|CI730801
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88676617|gb|CI730730.1|CI730730
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86860005|gb|CI321968.1|CI321968
EST:     TAACTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGT-GATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86899795|gb|CI327586.1|CI327586
EST:     TAAGTCGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88905315|gb|CI712614.1|CI712614
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|27545599|gb|CA763812.2|CA763812
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88668183|gb|CI722922.1|CI722922
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTNTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|29630218|gb|CB635227.1|CB635227
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88668205|gb|CI722944.1|CI722944
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|58694285|gb|CK082972.1|CK082972
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86879077|gb|CI315454.1|CI315454
EST:     AGAAGCATCAAGGATGTTTTTTGAGACATT-                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: AGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88843485|gb|CI372385.1|CI372385
EST:     TCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88272036|gb|CI388089.1|CI388089
EST:     GAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: GAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86482466|gb|CI125099.1|CI125099
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88839273|gb|CI000745.1|CI000745
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88669499|gb|CI723417.1|CI723417
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|218479737|gb|FG953404.1|FG953404
EST:     AAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGNNNNNNNGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: AAGTGGAAAGACTAGGAAAGAAGCATCAAGGATG-TTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|87005768|gb|CI316187.1|CI316187
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88669998|gb|CI724114.1|CI724114
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|29629880|gb|CB634889.1|CB634889
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|117252185|gb|CT844343.1|CT844343
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88675484|gb|CI729597.1|CI729597
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88838398|gb|CI373758.1|CI373758
EST:     GGAAAGAACCATCAAGGATGTTTTTTGAAACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: GGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88675910|gb|CI730023.1|CI730023
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88670042|gb|CI724158.1|CI724158
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88674244|gb|CI728357.1|CI728357
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88269543|gb|CI380841.1|CI380841
EST:     TGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|86481978|gb|CI124611.1|CI124611
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|29625772|gb|CB630783.1|CB630783
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|29624492|gb|CB629503.1|CB629503
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTCGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|89194774|gb|CI003238.1|CI003238
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
EST: gi|88594069|gb|CI713240.1|CI713240
EST:     TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTG                         GTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT
genomic: TAAGTGGAAAGACTAGGAAAGAAGCATCAAGGATGTTTTTTGAGACATTGgtaagacggt ... ccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatttctgttgacattatccttggtacttattgtgttctgttccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGATTTTGTCAGCGTTAAGCCAGGGCCAAAGCTCCTGAAGTCAGATTTCTAGA
         tgttgac  putative branch site (score: 3)
                                      ttctgttcc  putative PPT
                           tacttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattgtcaaactagacctgcaatggtagcttaaattgttttctcgaatcatttctgttgacattatccttggtacttattgtgttctgttccattcacagGTTCTGACAACAAAGGACTTCATAAGTGTGGATCAACCAAACTCCTTTGATTTTGTCAGCGTTAAGCCAGGGCCAAAGCTCCTGAAGTCAGATTTCTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG