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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatatttttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcag

Basic information

species Oryza sativa
transcript LOC_Os01g60120.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G021589_T03 (Zea mays), 5'ss of exon 8
GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatatttttcttgttacatttctgttc-taatgctctctgtacgcatatgccatactttcag
 |||||||| ||||||| ||||||||| | ||||| || ||||| || ||| |||||||||||||  | | || |        ||| || |   |   | | | ||||      ||   |  |  |  |     | | | |||| | | | |  ||| | |    | |  | || | | | |  |   |    |         
ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCATCTTGATCAGGTATGGGT-ATTTGAATTTTCCACCCCGAGAGgtactaccagt-tagcctgggcatctgtggaaatccattgacttctgacaatgtatattt--ttagaataagatccacagtgttttttttctgttaacattaa--------

upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G021589_T05 (Zea mays), 5'ss of exon 8
GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatattt-ttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcag
 |||||||| ||||||| ||||||||| | ||||| || ||||| || ||| |||||||||||||  | | || |        ||| || |   |   | | | ||||      ||   |  |  |  |     | | | |||| | | || ||   | |                                           
ATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCATCTTGATCAGgtatgggt-atttgaattttccaccccgagaggtactaccagt-tagcctgggcatctgtggaaatccattgacttctgacaatgtatatttttagaataag-----------------------------------------

upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G021589_T02 (Zea mays), 5'ss of exon 7
----------------------------------------GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatgactttaccaggtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatattt-ttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcag
                                         |||||||| ||||||| ||||||||| | ||||| || ||||| || ||| |||||||||||||  | | || |        ||| || |   |   | | | ||||      ||   |  |  |  |     | | | |||| | | || ||   | |                                           
GATGGATAGTTTTGATTAACTTGTCTTTCGTCTGATACAGATTGCTCGGATAATCTTATTCATATATATGTTCACCCATATGTATTTTCATCTTGATCAGgtatgggt-atttgaattttccaccccgagaggtactaccagt-tagcctgggcatctgtggaaatccattgacttctgacaatgtatatttttagaataag-----------------------------------------

upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ27642 (Selaginella moellendorffii), 5'ss of exon 7
GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatgactttaccag--gtttcccagataatcaaatcaaatatagctattaaattcatctacctttacattttaccggcaatatttttcttgttacatttctgttctaatgctctctgtacgcatatgccatactttcag
 |   ||| ||  |  | ||  | || ||||||||||| || ||| ||||||||||||||||| || |     ||   |  ||||  |   | |||    ||                                                                                                      
ATCTTTCGAGTGCTGCTCTTTGTCTACTTCTTCACTCATATTTACCTCCATTTTGATCAGgtaagcgttttggtaattgttgttttactcgttatcttgacag-----------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86261222|gb|CI004787.1|CI004787
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|8859152|gb|AU096470.1|AU096470
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|29669062|gb|CB665337.1|CB665337
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|313084023|gb|HO213806.1|HO213806
EST:     TTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
genomic: TTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|29664738|gb|CB661013.1|CB661013
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATTTTCCCCCTGGGCTTTTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|8527754|gb|AU092569.1|AU092569
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG
EST: gi|29669064|gb|CB665339.1|CB665339
EST:     TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAG                         GTGAAGTCCATCTTCCCCCTGGGCTTTTACAGTATACTGACGGTGCCACCG
genomic: TAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCATTTTGATCAGgtatgcatga ... atactttcagGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGTATACTGACGGTGCCACCG