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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGGAGGTTGCTGGTAAGAAGACGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataacccatgatgacttgatttaaataattaatcaaattttcagctctcctattgctcttttgaaacacgtgatttacaaacctttggttggtttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g60120.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G021589_T05 (Zea mays), 5'ss of exon 7
GTATTTGGAGGTTGCTGGTAAGAAGACGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataacccatgatgacttgatttaaataattaatcaaattttcagctctcctattgctcttttgaaacacgtgatttacaaacctttggttggtttgcag-
||||||||| ||||||||| |||||||    || |||||||||||||||||  ||||||| ||||| |||||||||||| |||   || |  |  || | |   | ||  |  ||    ||  | ||    | |  |  | |  ||| || || |  ||  ||   |     |||   
GTATTTGGACGTTGCTGGTCAGAAGACTTGCAATCTTTACTTATACAATGGTGTGGCTCTATTTGTTGGATGGCTGgtacaacaactgctctcacgagtcatcaatttcttttaaagaacaaatttcta--tacagtcataatgcacatggttcaggaaagttgtctctaaatgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86261222|gb|CI004787.1|CI004787
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|8859152|gb|AU096470.1|AU096470
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29669062|gb|CB665337.1|CB665337
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29664738|gb|CB661013.1|CB661013
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|8527754|gb|AU092569.1|AU092569
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
EST: gi|29669064|gb|CB665339.1|CB665339
EST:     CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTG                         GTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT
genomic: CGCATAACCTTTACTTATACAATGGATTGGCTCTGTTTGTCGGATGGCTGgtataaccca ... tggtttgcagGTTGCTCGGGTAATCTTGTTCATATATTTCTTCACTCACATGTACTTCCAT