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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGGGATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtccacttaacccgttaaccctctttctttttctggcttagttttcagcacttcaatcgctcagttttagtctgctagtaggggtgaaaacgg...

Basic information

species Oryza sativa
transcript LOC_Os01g60120.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60120.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G021589_T02 (Zea mays), 5'ss of exon 2
---------------AGGAGGGATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtccacttaacccgttaaccctctttctttttctggcttagttttcagcacttcaatcgctcagttt-tagtctgctagtaggggtgaaaacgg--
                || |  ||| | ||||||||||||  | |||||| |||||||||||||||||||||||| |||||||||| |||||||| ||| ||||| |   | ||      |    | |  | | ||||||    ||   |  | | | ||||| |  | |  |  | ||  | |  |   |     | |||  
GAGCCGGTAGCGCGGGGGGGATATGCACGGGAATTTCGGGCCCCAGGAGCAGATTCTGTGGCCGGCGTCGGTTCTCGCCGGCATCGTCATGTGCGGCGCCgtaagct--tccctcgcttggccccctccttgtttttttcccctttcactagctggatttcaaactatgaactcatggttcgttccttccga-accatcggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87023693|gb|CI286444.1|CI286444
EST:     GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG                         GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC