Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatattctatatcttgctaccaatgttgaagcagatagttttatctcttttagaattcattgtatcttgctaccaacactcatcattttgcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGACAATATAAGCCCAATGAAAAAGGTTGAATGGAATAATAG

Basic information

species Oryza sativa
transcript LOC_Os01g60120.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87023693|gb|CI286444.1|CI286444
EST:     GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCG                         GTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC
genomic: GGATTCTGTGGCCGGCGTCGGTTCTTGCCGGCATCGCCATGTGCGCCGCGgtaagatgtc ... gcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttttagaattcattgtatcttgctaccaacactcatcattttgcccttccagGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAGGGTTATGACAATATAAGCCCAATGAAAAAGGTTGAATGGAATAATAG
                                      tcattttgcccttcc  CT-rich tract
     ttagaatt  TA-rich tract