1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagctgttcatttcctgctctgttctgagaaagttaaattttctcatataatttaattatgcacacctttcagaacaaaataaaaagaaaatctaaaaaatgttcttcatattgttctttgcatcaagtggcacaacatgcaaatgataaccgtataatgtatcattttaaattcatgtattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT
species | Oryza sativa |
transcript | LOC_Os01g60120.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTCATGGCTATCTGATGCCATGTTTGGG GTCTCGATTGGTTA-TTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCEST: gi|87023693|gb|CI286444.1|CI286444
genomic: AGAAACTCATGGCTATCTGATGCCATGTTTGGGgtaagctgtt ... tattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
EST: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGG GTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCEST: gi|29664738|gb|CB661013.1|CB661013
genomic: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGgtaagctgtt ... tattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
EST: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGG GTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCEST: gi|8527754|gb|AU092569.1|AU092569
genomic: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGgtaagctgtt ... tattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
EST: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGG GTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCEST: gi|29669064|gb|CB665339.1|CB665339
genomic: GCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGgtaagctgtt ... tattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
EST: ATGCCATGTTTGGG GTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
genomic: ATGCCATGTTTGGGgtaagctgtt ... tattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTC
caacatgcaaatgataaccgtataatgtatcattttaaattcatgtattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT
tgataac putative branch site (score: 2)
tataatgtatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgttcatttcctgctctgttctgagaaagttaaattttctcatataatttaattatgcacacctttcagaacaaaataaaaagaaaatctaaaaaatgttcttcatattgttctttgcatcaagtggcacaacatgcaaatgataaccgtataatgtatcattttaaattcatgtattgtgcagGTCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGAAAGGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA